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Tutorials:
Using CellTypist for cell type classification
Using CellTypist for multi-label classification
Best practice in large-scale cross-dataset label transfer using CellTypist
API (classification):
Training function
Prediction function
Dot plot function
Model download function
Downsampling function
Package organization:
Prediction result
Classifier structure
Model structure
celltypist
Index
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Index
A
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C
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D
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E
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F
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I
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L
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M
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O
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P
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S
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T
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W
A
adata (celltypist.classifier.AnnotationResult attribute)
(celltypist.classifier.Classifier attribute)
annotate() (in module celltypist)
AnnotationResult (class in celltypist.classifier)
C
cell_count (celltypist.classifier.AnnotationResult attribute)
cell_types (celltypist.models.Model property)
celltype() (celltypist.classifier.Classifier method)
classifier (celltypist.models.Model attribute)
Classifier (class in celltypist.classifier)
convert() (celltypist.models.Model method)
D
decision_matrix (celltypist.classifier.AnnotationResult attribute)
description (celltypist.models.Model attribute)
dotplot() (in module celltypist)
download_models() (in module celltypist.models)
downsample_adata() (in module celltypist.samples)
E
extract_top_markers() (celltypist.models.Model method)
F
features (celltypist.models.Model property)
filename (celltypist.classifier.Classifier attribute)
I
indata (celltypist.classifier.Classifier attribute)
indata_genes (celltypist.classifier.Classifier attribute)
indata_names (celltypist.classifier.Classifier attribute)
L
load() (celltypist.models.Model static method)
M
majority_vote() (celltypist.classifier.Classifier static method)
model (celltypist.classifier.Classifier attribute)
Model (class in celltypist.models)
O
over_cluster() (celltypist.classifier.Classifier method)
P
predict_labels_and_prob() (celltypist.models.Model method)
predicted_labels (celltypist.classifier.AnnotationResult attribute)
probability_matrix (celltypist.classifier.AnnotationResult attribute)
S
scaler (celltypist.models.Model attribute)
summary_frequency() (celltypist.classifier.AnnotationResult method)
T
to_adata() (celltypist.classifier.AnnotationResult method)
to_plots() (celltypist.classifier.AnnotationResult method)
to_table() (celltypist.classifier.AnnotationResult method)
train() (in module celltypist)
W
write() (celltypist.models.Model method)
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